ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5df7B3 - ECOD Domain | ECOD

ECOD/Domains/e5df7B3

e5df7B3

UID: 001763484

PDB

Range: B:223-290,B:412-563
PDB: 5DF7 chain B(all domains)
UniProt: Q51504 (all domains)
Gene: pbpB

Molecule: Cell division protein

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

(2R,4S)-5,5-dimethyl-2-[(1R)-2-oxo-1-{[(2R)-2-{[(2-oxoimidazolidin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}ethyl]-1,3-thiazolidine-4-carboxylic acid59H
Chloride ionCL

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 5DF7 RCSB PDB: 5DF7 PDBe: 5DF7 UniProt: Q51504

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

ImidazoleIMD

DrugBank DB03366within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.