ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3l6tA1 - ECOD Domain | ECOD

ECOD/Domains/e3l6tA1

e3l6tA1

UID: 000176350

PDB

Range: A:-2-225
PDB: 3L6T chain A(all domains)
UniProt: Q9X4G2 (all domains)
Gene: traI

Molecule: Mobilization protein TraI

3D Structure

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Related Domains

Browse other domains in TrwC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOrigin of replication-binding domains(304.55)

TT-groupOrigin of replication-binding domains(304.55.1)

FFamilyTrwC(304.55.1.8)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
Sodium ionNA
metal

Pfam Families

TrwC relaxase

ClanCL0169Rep

External Links

ECOD PDB View: 3L6T RCSB PDB: 3L6T PDBe: 3L6T UniProt: Q9X4G2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

NICKEL (II) IONNI

metal

+ 3 additives (Citric acid, Phosphate ion, 1,2-ETHANEDIOL)

Citric acidCIT
DrugBank DB04272
Phosphate ionPO4
DrugBank DB14523
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.