ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5f01A1 - ECOD Domain | ECOD

ECOD/Domains/e5f01A1

e5f01A1

UID: 001763916

PDB

Range: A:245-446
PDB: 5F01 chain A(all domains)
UniProt: P56817 (all domains)
Gene: BACE1

Molecule: Beta-secretase 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

(1~{R},2~{R})-2-[(4~{R})-2-azanyl-5,5-bis(fluoranyl)-4-methyl-6~{H}-1,3-oxazin-4-yl]-~{N}-(3-chloranylquinolin-8-yl)cyclopropane-1-carboxamide5T7
Sodium ionNA
metal

+ 2 additives (Acetate, Dimethyl sulfoxide)

AcetateACT

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5F01 RCSB PDB: 5F01 PDBe: 5F01 UniProt: P56817

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Dimethyl sulfoxideDMS

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.