ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5h8nB1 - ECOD Domain | ECOD

ECOD/Domains/e5h8nB1

e5h8nB1

UID: 001764009

PDB

Range: B:5-144,B:250-289
PDB: 5H8N chain B(all domains)
UniProt: Q05586 (all domains)
Gene: GRIN1

Molecule: Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1

3D Structure

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Related Domains

Browse other domains in SBP_bac_3, Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3, Lig_chan-Glu_bd(7523.1.1.52)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
Glutamic acidGLU
drugDrugBank DB00142within 5 Å only

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 5H8N RCSB PDB: 5H8N PDBe: 5H8N UniProt: Q05586

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

4-[[(4-fluorophenyl)sulfonylamino]methyl]-~{N}-(pyridin-3-ylmethyl)benzamide

Calcium ionCA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.