ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5h8sA2 - ECOD Domain | ECOD

ECOD/Domains/e5h8sA2

e5h8sA2

UID: 001764020

PDB

Range: A:3-108,A:219-261
PDB: 5H8S chain A(all domains)
UniProt: P42262 (all domains)
Gene: GRIA2

Molecule: Glutamate receptor 2,Glutamate receptor 2

3D Structure

Loading viewer...

Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

Glutamic acidGLU
drugDrugBank DB00142
7-[[ethyl(phenyl)amino]methyl]-2-methyl-[1,3,4]thiadiazolo[3,2-a]pyrimidin-5-one5YC
Zinc ionZN

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 5H8S RCSB PDB: 5H8S PDBe: 5H8S UniProt: P42262

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.