ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3av0B1 - ECOD Domain | ECOD

ECOD/Domains/e3av0B1

e3av0B1

UID: 001772308

PDB

Range: B:1-181,B:844-1005
PDB: 3AV0 chain B(all domains)
UniProt: Q58718 (all domains)
Gene: rad50

Molecule: DNA double-strand break repair rad50 ATPase

3D Structure

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Related Domains

Browse other domains in AAA_23, AAA_29, SbcC_Walker_B →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyAAA_23, AAA_29, SbcC_Walker_B(2004.1.1.514)

Ligands

in contact, ≤ 4 Å

Adenosine 5'-[gamma-thio]triphosphateAGS
drugDrugBank DB02930
Magnesium ionMG
metal

+ 3 additives (Glycerin, Isopropyl alcohol, Sulfate ion)

Pfam Families

AAA domain

ClanCL0023P-loop_NTPase

P-loop containing region of AAA domain

ClanCL0023P-loop_NTPase

PF13558SbcC_Walker_B

SbcC/RAD50-like, Walker B motif

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 3AV0 RCSB PDB: 3AV0 PDBe: 3AV0 UniProt: Q58718

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Isopropyl alcoholIPA

DrugBank DB02325

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.