ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ndjA3 - ECOD Domain | ECOD

ECOD/Domains/e3ndjA3

e3ndjA3

UID: 001772733

PDB

Range: A:10-66
PDB: 3NDJ chain A(all domains)
UniProt: B5L6K6 (all domains)

Molecule: Methyltransferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_13 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyMethyltransf_13(375.1.1.41)

Ligands

in contact, ≤ 4 Å

(2R,4S,6R)-4-amino-4,6-dimethyl-5-oxotetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)JHZ
Zinc ionZN
metal

+ 1 additive (Phosphate ion)

Pfam Families

PF08421Methyltransf_13

Putative zinc binding domain

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 3NDJ RCSB PDB: 3NDJ PDBe: 3NDJ UniProt: B5L6K6

Downloads

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Phosphate ionPO4
DrugBank DB14523within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.