ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xnbA3 - ECOD Domain | ECOD

ECOD/Domains/e4xnbA3

e4xnbA3

UID: 001779664

PDB

Range: A:548-870
PDB: 4XNB chain A(all domains)
UniProt: P04825 (all domains)
Gene: pepN

Molecule: Aminopeptidase N

3D Structure

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Related Domains

Browse other domains in DUF3458_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyDUF3458_C(109.4.1.241)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
(3S)-3-AMINO-4-PHENYLBUTANOIC ACID3FB
within 5 Å only

+ 2 additives (Malonate Ion, Glycerol)

Malonate IonMLI

Pfam Families

PF17432DUF3458_C

Domain of unknown function (DUF3458_C) ARM repeats

ClanCL0020TPR

External Links

ECOD PDB View: 4XNB RCSB PDB: 4XNB PDBe: 4XNB UniProt: P04825

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB02201

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.