ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yekA3 - ECOD Domain | ECOD

ECOD/Domains/e4yekA3

e4yekA3

UID: 001779827

PDB

Range: A:336-440
PDB: 4YEK chain A(all domains)
UniProt: Q7CP66 (all domains)
Gene: deoA

Molecule: Thymidine phosphorylase

3D Structure

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Related Domains

Browse other domains in PYNP_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupPyrimidine nucleoside phosphorylase C-terminal domain(325.1.3)

FFamilyPYNP_C(325.1.3.1)

Ligands

in contact, ≤ 4 Å

ThymidineTHM
drugDrugBank DB04485

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

Pyrimidine nucleoside phosphorylase C-terminal domain

ClanCL0105Hybrid

External Links

ECOD PDB View: 4YEK RCSB PDB: 4YEK PDBe: 4YEK UniProt: Q7CP66

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.