ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bpfA2 - ECOD Domain | ECOD

ECOD/Domains/e5bpfA2

e5bpfA2

UID: 001780045

PDB

Range: A:1-96
PDB: 5BPF chain A(all domains)
UniProt: Q8ZIE7 (all domains)
Gene: ddl

Molecule: D-alanine-D-alanine ligase

3D Structure

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Related Domains

Browse other domains in Dala_Dala_lig_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupPreATP-grasp domain(2003.1.10)

FFamilyDala_Dala_lig_N(2003.1.10.2)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01820Dala_Dala_lig_N

D-ala D-ala ligase N-terminus

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5BPF RCSB PDB: 5BPF PDBe: 5BPF UniProt: Q8ZIE7

Downloads

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