ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bphD2 - ECOD Domain | ECOD

ECOD/Domains/e5bphD2

e5bphD2

UID: 001780059

PDB

Range: D:97-306
PDB: 5BPH chain D(all domains)
UniProt: Q8ZIE7 (all domains)
Gene: ddl

Molecule: D-alanine--D-alanine ligase

3D Structure

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Related Domains

Browse other domains in Dala_Dala_lig_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDala_Dala_lig_C(206.1.3.19)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Sodium ionNA
metal

+ 2 additives (Acetate, Glycerin)

AcetateACT

Pfam Families

PF07478Dala_Dala_lig_C

D-ala D-ala ligase C-terminus

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 5BPH RCSB PDB: 5BPH PDBe: 5BPH UniProt: Q8ZIE7

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.