ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c9jA1 - ECOD Domain | ECOD

ECOD/Domains/e5c9jA1

e5c9jA1

UID: 001780160

PDB

Range: A:9-187
PDB: 5C9J chain A(all domains)
UniProt: P29016 (all domains)
Gene: CD1B

Molecule: T-cell surface glycoprotein CD1c,T-cell surface glycoprotein CD1b

3D Structure

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Related Domains

Browse other domains in MHC_I_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMHC antigen-recognition domain(233)

HH-groupMHC antigen-recognition domain(233.1)

TT-groupMHC antigen-recognition domain(233.1.1)

FFamilyMHC_I_3(233.1.1.6)

Ligands

in contact, ≤ 4 Å

Lauric acidDAO
drugDrugBank DB03017
Stearic acidSTE
drugDrugBank DB03193

+ 2 additives (Glycerin, Phosphate ion)

Pfam Families

PF16497MHC_I_3

MHC-I family domain

ClanCL0343MHC

External Links

ECOD PDB View: 5C9J RCSB PDB: 5C9J PDBe: 5C9J UniProt: P29016

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

GlycerinGOL

DrugBank DB09462

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.