ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d62A1 - ECOD Domain | ECOD

ECOD/Domains/e5d62A1

e5d62A1

UID: 001780178

PDB

Range: A:156-293
PDB: 5D62 chain A(all domains)
UniProt: Q8X123 (all domains)

Molecule: Agglutinin

3D Structure

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Related Domains

Browse other domains in Agglutinin_C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyAgglutinin_C(219.1.1.59)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
1,2-ETHANEDIOLEDO

Shown in the structure viewer.

Pfam Families

PF18021Agglutinin_C

Agglutinin C-terminal

ClanCL0066Trefoil

External Links

ECOD PDB View: 5D62 RCSB PDB: 5D62 PDBe: 5D62 UniProt: Q8X123

Downloads

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Drug annotations from DrugDomain.