ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kmoB1 - ECOD Domain | ECOD

ECOD/Domains/e4kmoB1

e4kmoB1

UID: 001786540

RepresentativePDB

Range: B:520-791
PDB: 4KMO chain B(all domains)
UniProt: G0S6M7 (all domains)
Gene: CTHT_0026760

Molecule: Putative vacuolar protein sorting-associated protein

3D Structure

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Related Domains

Browse other domains in Vps16_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyVps16_C(109.4.1.72)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04840Vps16_C

Vps16, C-terminal region

ClanCL0020TPR

External Links

ECOD PDB View: 4KMO RCSB PDB: 4KMO PDBe: 4KMO UniProt: G0S6M7

Downloads

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