ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4d65D1 - ECOD Domain | ECOD

ECOD/Domains/e4d65D1

e4d65D1

UID: 001787631

PDB

Range: D:1-343
PDB: 4D65 chain D(all domains)
UniProt: A0A0L6X8Y0 (all domains)

Molecule: PORIN 2

3D Structure

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Related Domains

Browse other domains in Porin_1 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupPorins(5084.5)

TT-groupPorin(5084.5.1)

FFamilyPorin_1(5084.5.1.1)

Ligands

in contact, ≤ 4 Å

(R)-3-hydroxytetradecanoic acidFTT
drugDrugBank DB02767
Myristic acidMYR
drugDrugBank DB08231

+ 2 additives (Dodecyldimethylamine N-oxide, Sulfate ion)

Pfam Families

PF00267Porin_1

Gram-negative porin

ClanCL0193MBB

External Links

ECOD PDB View: 4D65 RCSB PDB: 4D65 PDBe: 4D65 UniProt: A0A0L6X8Y0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.