ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4xg1C2 - ECOD Domain | ECOD

ECOD/Domains/e4xg1C2

e4xg1C2

UID: 001787670

PDB

Range: C:34-284
PDB: 4XG1 chain C(all domains)
UniProt: A1SR00 (all domains)
Gene: lysA

Molecule: Diaminopimelate decarboxylase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Orn_Arg_deC_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOrn_Arg_deC_N(2002.1.1.101)

Ligands

in contact, ≤ 4 Å

N(6)-(pyridoxal phosphate)-L-lysineLLP
drugDrugBank DB04083
Potassium ionK
metal
Thiocyanate ion

Pfam Families

PF02784Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4XG1 RCSB PDB: 4XG1 PDBe: 4XG1 UniProt: A1SR00

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.