ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4zghA1 - ECOD Domain | ECOD

ECOD/Domains/e4zghA1

e4zghA1

UID: 001787920

PDB

Range: A:2-359
PDB: 4ZGH chain A(all domains)
UniProt: Q04IN8 (all domains)
Gene: ply

Molecule: Pneumolysin

3D Structure

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Related Domains

Browse other domains in Thiol_cytolysin →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupMembrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains(5089)

HH-groupMembrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains(5089.1)

TT-groupMembrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains(5089.1.1)

FFamilyThiol_cytolysin(5089.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01289Thiol_cytolysin

Thiol-activated cytolysin

ClanCL0293CDC

External Links

ECOD PDB View: 4ZGH RCSB PDB: 4ZGH PDBe: 4ZGH UniProt: Q04IN8

Downloads

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