ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ag0B1 - ECOD Domain | ECOD

ECOD/Domains/e5ag0B1

e5ag0B1

UID: 001787950

PDB

Range: B:158-448
PDB: 5AG0 chain B(all domains)
UniProt: I2DBY1 (all domains)
Gene: dyp1

Molecule: DYE-DECOLORIZING PEROXIDASE

3D Structure

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Related Domains

Browse other domains in Dyp_perox_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupDimeric alpha+beta barrel(304.4)

TT-groupDimeric alpha+beta barrel(304.4.1)

FFamilyDyp_perox_C(304.4.1.23)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 3 additives (Formic acid, Glycerin, Cacodylate ion)

Pfam Families

PF20628Dyp_perox_C

Dyp-type peroxidase, C-terminal

ClanCL0032Dim_A_B_barrel

External Links

ECOD PDB View: 5AG0 RCSB PDB: 5AG0 PDBe: 5AG0 UniProt: I2DBY1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Formic acidFMT
DrugBank DB01942
GlycerinGOL
DrugBank DB09462
Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.