ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5droA1 - ECOD Domain | ECOD

ECOD/Domains/e5droA1

e5droA1

UID: 001788161

PDB

Range: A:122-268
PDB: 5DRO chain A(all domains)
UniProt: O67648 (all domains)
Gene: lpxC

Molecule: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in LpxC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyLpxC(212.1.1.15)

Ligands

in contact, ≤ 4 Å

4-[4-(4-aminophenyl)buta-1,3-diyn-1-yl]-N-[(2S,3R)-3-hydroxy-1-(hydroxyamino)-1-oxobutan-2-yl]benzamideZH2
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

UDP-3-O-acyl N-acetylglycosamine deacetylase

ClanCL0329S5

External Links

ECOD PDB View: 5DRO RCSB PDB: 5DRO PDBe: 5DRO UniProt: O67648

Downloads

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