ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4yqjA1 - ECOD Domain | ECOD

ECOD/Domains/e4yqjA1

e4yqjA1

UID: 001788879

PDB

Range: A:1-246
PDB: 4YQJ chain A(all domains)
UniProt: P43912 (all domains)
Gene: trmD

Molecule: tRNA (guanine-N(1)-)-methyltransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in tRNA_m1G_MT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilytRNA_m1G_MT(2488.1.1.3)

Ligands

in contact, ≤ 4 Å

4-amino-2-(cyclopentylamino)pyrimidine-5-carboxamide4GT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01746tRNA_m1G_MT

tRNA (Guanine-1)-methyltransferase TrmD

ClanCL0098SPOUT

External Links

ECOD PDB View: 4YQJ RCSB PDB: 4YQJ PDBe: 4YQJ UniProt: P43912

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure