ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yqkA1 - ECOD Domain | ECOD

ECOD/Domains/e4yqkA1

e4yqkA1

UID: 001788880

PDB

Range: A:1-245
PDB: 4YQK chain A(all domains)
UniProt: P43912 (all domains)
Gene: trmD

Molecule: tRNA (guanine-N(1)-)-methyltransferase

3D Structure

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Related Domains

Browse other domains in tRNA_m1G_MT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilytRNA_m1G_MT(2488.1.1.3)

Ligands

in contact, ≤ 4 Å

4-amino-N-(piperidin-4-yl)-1,2,5-oxadiazole-3-carboxamide4GS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01746tRNA_m1G_MT

tRNA (Guanine-1)-methyltransferase TrmD

ClanCL0098SPOUT

External Links

ECOD PDB View: 4YQK RCSB PDB: 4YQK PDBe: 4YQK UniProt: P43912

Downloads

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