ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5eudB2 - ECOD Domain | ECOD

ECOD/Domains/e5eudB2

e5eudB2

UID: 001789031

PDB

Range: B:59-371
PDB: 5EUD chain B(all domains)
UniProt: Q67PY4 (all domains)
Gene: STH1274

Molecule: Putative sphingosine-1-phosphate lyase

3D Structure

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Related Domains

Browse other domains in Pyridoxal_deC →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyPyridoxal_deC(7577.1.1.4)

Ligands

in contact, ≤ 4 Å

~{N}-[(1~{S})-2-[(4-methoxy-2,5-dimethyl-phenyl)methylamino]-1-[4-(3-oxidanylprop-1-ynyl)phenyl]ethyl]-5-methyl-1,2-oxazole-3-carboxamide5S6

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

PF00282Pyridoxal_deC

Pyridoxal-dependent decarboxylase conserved domain

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 5EUD RCSB PDB: 5EUD PDBe: 5EUD UniProt: Q67PY4

Downloads

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Drug annotations from DrugDomain.