ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yshB2 - ECOD Domain | ECOD

ECOD/Domains/e4yshB2

e4yshB2

UID: 001790232

PDB

Range: B:2-224,B:314-370
PDB: 4YSH chain B(all domains)
UniProt: Q5L2C2 (all domains)
Gene: thiO

Molecule: Glycine oxidase

3D Structure

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Related Domains

Browse other domains in DAO →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyDAO(2003.1.2.12)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
GlycineGLY
drugDrugBank DB00145

+ 2 additives (Isopropyl alcohol, Sulfate ion)

Pfam Families

FAD dependent oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 4YSH RCSB PDB: 4YSH PDBe: 4YSH UniProt: Q5L2C2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Isopropyl alcoholIPA
DrugBank DB02325
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.