ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b2tB4 - ECOD Domain | ECOD

ECOD/Domains/e5b2tB4

e5b2tB4

UID: 001790407

PDB

Range: B:58-713
PDB: 5B2T chain B(all domains)
UniProt: Q99ZW2 (all domains)
Gene: cas9

Molecule: CRISPR-associated endonuclease Cas9

3D Structure

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Related Domains

Browse other domains in REC lobe of CRISPR-associated endonuclease Cas9 / Bridge helix of CRISPR-associated endonuclease Cas9 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCRISPR-associated endonuclease Cas9 alpha-helical lobe(3819)

HH-groupCRISPR-associated endonuclease Cas9 alpha-helical lobe(3819.1)

TT-groupCRISPR-associated endonuclease Cas9 alpha-helical lobe(3819.1.1)

FFamilyREC lobe of CRISPR-associated endonuclease Cas9 / Bridge helix of CRISPR-associated endonuclease Cas9(3819.1.1.2)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

PF16592Cas9_REC

REC lobe of CRISPR-associated endonuclease Cas9

ClanCL0693Cas9_lobe

PF16593Cas9-BH

Bridge helix of CRISPR-associated endonuclease Cas9

External Links

ECOD PDB View: 5B2T RCSB PDB: 5B2T PDBe: 5B2T UniProt: Q99ZW2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.