ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d0vL1 - ECOD Domain | ECOD

ECOD/Domains/e5d0vL1

e5d0vL1

UID: 001790711

PDB

Range: L:1-222
PDB: 5D0V chain L(all domains)
UniProt: P23724 (all domains)
Gene: PRE7

Molecule: Proteasome subunit beta type-6

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

N-{(2S)-2-[(morpholin-4-ylacetyl)amino]-4-phenylbutanoyl}-L-leucyl-N-[(2R,3S,4S)-1,3-dihydroxy-2,6-dimethylheptan-4-yl]-L-phenylalaninamide3BV
within 5 Å only
Magnesium ionMG
metalwithin 5 Å only

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5D0V RCSB PDB: 5D0V PDBe: 5D0V UniProt: P23724

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.