ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hoqB1 - ECOD Domain | ECOD

ECOD/Domains/e5hoqB1

e5hoqB1

UID: 001807224

PDB

Range: B:7-110,B:132-257
PDB: 5HOQ chain B(all domains)
UniProt: Q8KNF1 (all domains)
Gene: calS11

Molecule: TDP-rhamnose 3'-O-methyltransferase (CalS11)

3D Structure

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Related Domains

Browse other domains in Methyltransf_24 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_24(2003.1.5.80)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13578Methyltransf_24

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5HOQ RCSB PDB: 5HOQ PDBe: 5HOQ UniProt: Q8KNF1

Downloads

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