ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f98C4 - ECOD Domain | ECOD

ECOD/Domains/e5f98C4

e5f98C4

UID: 001812899

PDB

Range: C:804-922
PDB: 5F98 chain C(all domains)
UniProt: O95786 (all domains)
Gene: RIGI

Molecule: Probable ATP-dependent RNA helicase DDX58

3D Structure

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Related Domains

Browse other domains in RIG-I_C-RD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupETN0001 domain-like(708)

HH-groupETN0001 domain-like(708.1)

TT-groupMss4-like(708.1.2)

FFamilyRIG-I_C-RD(708.1.2.7)

Ligands

in contact, ≤ 4 Å

7-methyl-7,8-dihydroguanosine-5'-diphosphateM7G
drugDrugBank DB01960
Magnesium ionMG
metal
Zinc ion

Pfam Families

PF11648RIG-I_C-RD

C-terminal domain of RIG-I

ClanCL0080Beta-tent

External Links

ECOD PDB View: 5F98 RCSB PDB: 5F98 PDBe: 5F98 UniProt: O95786

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.