ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nkmA5 - ECOD Domain | ECOD

ECOD/Domains/e3nkmA5

e3nkmA5

UID: 001820962

RepresentativePDB

Range: A:541-855
PDB: 3NKM chain A(all domains)
UniProt: Q9R1E6 (all domains)
Gene: Enpp2

Molecule: Ectonucleotide pyrophosphatase/phosphodiesterase family member 2

3D Structure

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Related Domains

Browse other domains in Endonuclease_NS →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupHis-Me finger endonucleases(378)

HH-groupHis-Me finger endonucleases(378.1)

TT-groupHis-Me finger endonucleases(378.1.1)

FFamilyEndonuclease_NS(378.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Potassium ionK
metal
Sodium ionNA

Pfam Families

PF01223Endonuclease_NS

DNA/RNA non-specific endonuclease

ClanCL0263His-Me_finger

External Links

ECOD PDB View: 3NKM RCSB PDB: 3NKM PDBe: 3NKM UniProt: Q9R1E6

Downloads

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metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.