ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fj8A1 - ECOD Domain | ECOD

ECOD/Domains/e5fj8A1

e5fj8A1

UID: 001820995

RepresentativePDB

Range: A:2-358
PDB: 5FJ8 chain A(all domains)
UniProt: P04051 (all domains)
Gene: RPO31

Molecule: DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246)

HH-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246.1)

TT-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246.1.1)

FFamilyRNA_pol_Rpb1_1(4246.1.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04997RNA_pol_Rpb1_1

RNA polymerase Rpb1, domain 1

External Links

ECOD PDB View: 5FJ8 RCSB PDB: 5FJ8 PDBe: 5FJ8 UniProt: P04051

Downloads

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