ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dnfA1 - ECOD Domain | ECOD

ECOD/Domains/e5dnfA1

e5dnfA1

UID: 001821341

PDB

Range: A:4-68
PDB: 5DNF chain A(all domains)
UniProt: P13501 (all domains)
Gene: CCL5

Molecule: C-C motif chemokine 5

3D Structure

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Related Domains

Browse other domains in IL8 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupIL8-related(1170)

HH-groupIL8-related(1170.1)

TT-groupIL8(1170.1.1)

FFamilyIL8(1170.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta-D-GlucoseBGC
drugDrugBank DB02379
Chloride ionCL
alpha-D-galactopyranoseGLA

Pfam Families

Small cytokines (intecrine/chemokine), interleukin-8 like

ClanCL0730IL8

External Links

ECOD PDB View: 5DNF RCSB PDB: 5DNF PDBe: 5DNF UniProt: P13501

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.