ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ibqA2 - ECOD Domain | ECOD

ECOD/Domains/e5ibqA2

e5ibqA2

UID: 001822362

PDB

Range: A:131-263,A:289-312
PDB: 5IBQ chain A(all domains)
UniProt: Q2JZQ5 (all domains)
Gene: RHE_PF00037

Molecule: Probable ribose ABC transporter, substrate-binding protein

3D Structure

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Related Domains

Browse other domains in Peripla_BP_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_4(2007.1.2.11)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
3-C-(hydroxylmethyl)-alpha-D-erythrofuranoseXXM

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13407Peripla_BP_4

Periplasmic binding protein domain

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 5IBQ RCSB PDB: 5IBQ PDBe: 5IBQ UniProt: Q2JZQ5

Downloads

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