ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yx6A1 - ECOD Domain | ECOD

ECOD/Domains/e4yx6A1

e4yx6A1

UID: 001824170

RepresentativePDB

Range: A:85-380,A:481-543
PDB: 4YX6 chain A(all domains)
UniProt: Q8EGK4 (all domains)
Gene: pfaD

Molecule: Omega-3 polyunsaturated fatty acid synthase subunit PfaD

3D Structure

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Related Domains

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Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyNMO(2002.1.1.108)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247
Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Nitronate monooxygenase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4YX6 RCSB PDB: 4YX6 PDBe: 4YX6 UniProt: Q8EGK4

Downloads

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