ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ikkA2 - ECOD Domain | ECOD

ECOD/Domains/e5ikkA2

e5ikkA2

UID: 001824188

RepresentativePDB

Range: A:420-680
PDB: 5IKK chain A(all domains)
UniProt: P56523 (all domains)
Gene: clr3

Molecule: Histone deacetylase clr3

3D Structure

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Related Domains

Browse other domains in Arb2-like →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta-Hydrolases(7579)

HH-groupalpha/beta-Hydrolases(7579.1)

TT-groupalpha/beta-Hydrolases(7579.1.1)

FFamilyArb2-like(7579.1.1.39)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 3 additives (Nitrate, Sulfate ion, 1,2-ETHANEDIOL)

NitrateNO3
DrugBank DB14049
Sulfate ion

Pfam Families

PF09757Arb2-like

Arb2-like domain

ClanCL0028AB_hydrolase

External Links

ECOD PDB View: 5IKK RCSB PDB: 5IKK PDBe: 5IKK UniProt: P56523

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.