ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5fyjB1 - ECOD Domain | ECOD

ECOD/Domains/e5fyjB1

e5fyjB1

UID: 001824536

PDB

Range: B:512-547,B:569-665
PDB: 5FYJ chain B(all domains)
UniProt: C6ZIG9 (all domains)
Gene: env

Molecule: GP41 ENV ECTODOMAIN

3D Structure

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Related Domains

Browse other domains in GP41 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupMPER trimer(3567)

HH-groupMPER trimer(3567.1)

TT-groupMPER trimer(3567.1.1)

FFamilyGP41(3567.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

+ 2 additives (Citric acid, 1,2-ETHANEDIOL)

Citric acidCIT
DrugBank DB04272

Pfam Families

Retroviral envelope protein

External Links

ECOD PDB View: 5FYJ RCSB PDB: 5FYJ PDBe: 5FYJ UniProt: C6ZIG9

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.