ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ww5A1 - ECOD Domain | ECOD

ECOD/Domains/e2ww5A1

e2ww5A1

UID: 001826876

RepresentativePDB

Range: A:38-266
PDB: 2WW5 chain A(all domains)
UniProt: Q8DP07 (all domains)
Gene: lytC

Molecule: 1,4-BETA-N-ACETYLMURAMIDASE

3D Structure

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Related Domains

Browse other domains in Choline_bind_1,Choline_bind_2 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-hairpin stack(702)

HH-groupbeta-hairpin stack(702.1)

TT-groupbeta-hairpin stack(702.1.1)

FFamilyCholine_bind_1,Choline_bind_2(702.1.1.3)

Ligands

in contact, ≤ 4 Å

CholineCHT
drugDrugBank DB00122
Chloride ionCL

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01473Choline_bind_1

Putative cell wall binding repeat

ClanCL0694Choline_binding

PF19085Choline_bind_2

Choline-binding repeat

ClanCL0694Choline_binding

External Links

ECOD PDB View: 2WW5 RCSB PDB: 2WW5 PDBe: 2WW5 UniProt: Q8DP07

Downloads

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