ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ikfA2 - ECOD Domain | ECOD

ECOD/Domains/e5ikfA2

e5ikfA2

UID: 001826909

RepresentativePDB

Range: A:1330-1384
PDB: 5IKF chain A(all domains)
UniProt: Q9P793 (all domains)
Gene: mit1

Molecule: Chromatin remodeling factor mit1

3D Structure

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Related Domains

Browse other domains in zf-CCCH_6 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupCCHC-type 1 zinc finger(396)

HH-groupChromatin remodeling factor Mit1 C-terminal Zn fingers(396.2)

TT-groupChromatin remodeling factor Mit1 C-terminal Zn fingers(396.2.1)

FFamilyzf-CCCH_6(396.2.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18585zf-CCCH_6

Chromatin remodeling factor Mit1 C-terminal Zn finger 2

ClanCL0537CCCH_zf

External Links

ECOD PDB View: 5IKF RCSB PDB: 5IKF PDBe: 5IKF UniProt: Q9P793

Downloads

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