ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c07D2 - ECOD Domain | ECOD

ECOD/Domains/e5c07D2

e5c07D2

UID: 001827093

PDB

Range: D:2-112
PDB: 5C07 chain D(all domains)
UniProt: A0A0B4J271 (all domains)
Gene: TRAV12-3

Molecule: 1E6 TCR Alpha Chain

3D Structure

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Related Domains

Browse other domains in V-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyV-set(11.1.1.99)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Sulfate ion, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOL

Pfam Families

Immunoglobulin V-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 5C07 RCSB PDB: 5C07 PDBe: 5C07 UniProt: A0A0B4J271

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.