ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c0jB1 - ECOD Domain | ECOD

ECOD/Domains/e5c0jB1

e5c0jB1

UID: 001827190

PDB

Range: B:0-99
PDB: 5C0J chain B(all domains)
UniProt: P61769 (all domains)
Gene: B2M

Molecule: Beta-2-microglobulin

3D Structure

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Related Domains

Browse other domains in C1-set →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyC1-set(11.1.1.96)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 3 additives (Glycerin, Sulfate ion, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
Sulfate ion

Pfam Families

Immunoglobulin C1-set domain

ClanCL0159E-set

External Links

ECOD PDB View: 5C0J RCSB PDB: 5C0J PDBe: 5C0J UniProt: P61769

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.