ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5c2yA1 - ECOD Domain | ECOD

ECOD/Domains/e5c2yA1

e5c2yA1

UID: 001827191

PDB

Range: A:1-176
PDB: 5C2Y chain A(all domains)
UniProt: P40084 (all domains)
Gene: RTR1

Molecule: RNA polymerase II subunit B1 CTD phosphatase RTR1

3D Structure

Loading viewer...

Related Domains

Browse other domains in RPAP2_Rtr1 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRegulator of transcription protein Rtr1(3371)

HH-groupRegulator of transcription protein Rtr1(3371.1)

TT-groupRegulator of transcription protein Rtr1(3371.1.1)

FFamilyRPAP2_Rtr1(3371.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ion

Pfam Families

PF04181RPAP2_Rtr1

Rtr1/RPAP2 family

External Links

ECOD PDB View: 5C2Y RCSB PDB: 5C2Y PDBe: 5C2Y UniProt: P40084

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.