ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dzyF2 - ECOD Domain | ECOD

ECOD/Domains/e5dzyF2

e5dzyF2

UID: 001827370

PDB

Range: F:99-208
PDB: 5DZY chain F(all domains)
UniProt: Q91XZ2 (all domains)
Gene: Pcdhb8

Molecule: Pcdhb8 protein

3D Structure

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Related Domains

Browse other domains in Cadherin →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyCadherin(11.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
alpha-D-mannopyranoseMAN
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00028Cadherin

Cadherin domain

ClanCL0159E-set

External Links

ECOD PDB View: 5DZY RCSB PDB: 5DZY PDBe: 5DZY UniProt: Q91XZ2

Downloads

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