ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ersA1 - ECOD Domain | ECOD

ECOD/Domains/e5ersA1

e5ersA1

UID: 001827652

PDB

Range: A:499-653
PDB: 5ERS chain A(all domains)
UniProt: Q03555 (all domains)
Gene: Gphn

Molecule: Gephyrin

3D Structure

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Related Domains

Browse other domains in MoCF_biosynth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMolybdenum cofactor biosynthesis proteins(7541)

HH-groupMolybdenum cofactor biosynthesis proteins(7541.1)

TT-groupMolybdenum cofactor biosynthesis proteins(7541.1.1)

FFamilyMoCF_biosynth(7541.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Magnesium ionMG
metal

+ 3 additives ((4r)-2-Methylpentane-2,4-Diol, Phosphate ion, Acetate ion)

Pfam Families

PF00994MoCF_biosynth

Probable molybdopterin binding domain

External Links

ECOD PDB View: 5ERS RCSB PDB: 5ERS PDBe: 5ERS UniProt: Q03555

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Phosphate ionPO4

DrugBank DB14523

Acetate ionACT

Shown in the structure viewer. Drug annotations from DrugDomain.