ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jg4B1 - ECOD Domain | ECOD

ECOD/Domains/e5jg4B1

e5jg4B1

UID: 001827965

PDB

Range: B:168-400
PDB: 5JG4 chain B(all domains)

Molecule: effector protein LpiR1

3D Structure

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Related Domains

Browse other domains in SoDot-IcmSS →

Classification

AArchitecturealpha bundles(a.7)

XX-groupUncharacterized protein lpg1851(3848)

HH-groupUncharacterized protein lpg1851(3848.1)

TT-groupUncharacterized protein lpg1851(3848.1.1)

FFamilySoDot-IcmSS(3848.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Phosphate ion, Citrate anion)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523
Citrate anion

Pfam Families

PF16848SoDot-IcmSS

Substrate of the Dot/Icm secretion system, putative

External Links

ECOD PDB View: 5JG4 RCSB PDB: 5JG4 PDBe: 5JG4

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.