ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m1uB3 - ECOD Domain | ECOD

ECOD/Domains/e3m1uB3

e3m1uB3

UID: 001828192

PDB

Range: B:302-461
PDB: 3M1U chain B(all domains)
UniProt: Q72DN3 (all domains)
Gene: DVU_0896

Molecule: Putative gamma-D-glutamyl-L-diamino acid endopeptidase

3D Structure

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Related Domains

Browse other domains in NLPC_P60 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyNLPC_P60(219.1.1.8)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 3 additives (Acetate, Glycerin, 2-(N-morpholino)ethanesulfonic acid)

AcetateACT
DrugBank DB14511
GlycerinGOL

Pfam Families

PF00877NLPC_P60

NlpC/P60 family

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 3M1U RCSB PDB: 3M1U PDBe: 3M1U UniProt: Q72DN3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

2-(N-morpholino)ethanesulfonic acidMES

DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.