ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5je2B1 - ECOD Domain | ECOD

ECOD/Domains/e5je2B1

e5je2B1

UID: 001828969

PDB

Range: B:5-245
PDB: 5JE2 chain B(all domains)
UniProt: Q9LBJ0 (all domains)
Gene: toxA

Molecule: Methyl transferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_25 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_25(2003.1.5.81)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 3 additives (Dimethyl sulfoxide, Tromethamine, Tetraethylene glycol)

Dimethyl sulfoxideDMS
DrugBank DB01093

Pfam Families

PF13649Methyltransf_25

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5JE2 RCSB PDB: 5JE2 PDBe: 5JE2 UniProt: Q9LBJ0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

TromethamineTRS

DrugBank DB03754

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.