ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dvxB1 - ECOD Domain | ECOD

ECOD/Domains/e4dvxB1

e4dvxB1

UID: 001829486

PDB

Range: B:256-473
PDB: 4DVX chain B(all domains)
UniProt: Q0ED31 (all domains)
Gene: env

Molecule: clade A/E 93TH057 HIV-1 gp120 core

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
N-(4-chloro-3-fluorophenyl)-N'-{[(3R)-1-cyclopropylpyrrolidin-3-yl]methyl}ethanediamide0M5

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 4DVX RCSB PDB: 4DVX PDBe: 4DVX UniProt: Q0ED31

Downloads

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