ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jpjB1 - ECOD Domain | ECOD

ECOD/Domains/e4jpjB1

e4jpjB1

UID: 001829558

PDB

Range: B:1-172
PDB: 4JPJ chain B(all domains)
UniProt: P04578 (all domains)
Gene: env

Molecule: Germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT6

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 4JPJ RCSB PDB: 4JPJ PDBe: 4JPJ UniProt: P04578

Downloads

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