ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jzwG1 - ECOD Domain | ECOD

ECOD/Domains/e4jzwG1

e4jzwG1

UID: 001829574

PDB

Range: G:44-255,G:474-492
PDB: 4JZW chain G(all domains)
UniProt: P35961 (all domains)
Gene: env

Molecule: HIV-1 YU2 gp120 glycoprotein

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupgp120 inner domain(1061)

HH-groupgp120 inner domain(1061.1)

TT-groupgp120 inner domain(1061.1.1)

FFamilyGP120(1061.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 2 additives (Isopropyl alcohol, 1,2-ETHANEDIOL)

Isopropyl alcoholIPA
1,2-ETHANEDIOLEDO

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 4JZW RCSB PDB: 4JZW PDBe: 4JZW UniProt: P35961

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.