ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ngbI2 - ECOD Domain | ECOD

ECOD/Domains/e3ngbI2

e3ngbI2

UID: 001829620

PDB

Range: I:256-301,I:324-473
PDB: 3NGB chain I(all domains)
UniProt: Q0ED31 (all domains)
Gene: env

Molecule: Envelope glycoprotein gp160

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta-D-GlucoseBGC
drugDrugBank DB02379within 5 Å only
N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 3NGB RCSB PDB: 3NGB PDBe: 3NGB UniProt: Q0ED31

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.