ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3se8G2 - ECOD Domain | ECOD

ECOD/Domains/e3se8G2

e3se8G2

UID: 001829797

PDB

Range: G:44-255,G:474-492
PDB: 3SE8 chain G(all domains)
UniProt: Q0ED31 (all domains)
Gene: env

Molecule: HIV-1 Clade AE strain 93TH057 gp120

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupgp120 inner domain(1061)

HH-groupgp120 inner domain(1061.1)

TT-groupgp120 inner domain(1061.1.1)

FFamilyGP120(1061.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 3SE8 RCSB PDB: 3SE8 PDBe: 3SE8 UniProt: Q0ED31

Downloads

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Drug annotations from DrugDomain.