ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cayG2 - ECOD Domain | ECOD

ECOD/Domains/e5cayG2

e5cayG2

UID: 001830058

PDB

Range: G:272-484
PDB: 5CAY chain G(all domains)
UniProt: P20872 (all domains)
Gene: env

Molecule: Envelope glycoprotein gp120 core from ST strain of HIV-2

3D Structure

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Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein L31e-like(259)

HH-groupRibosomal protein L31e/gp120 outer domain(259.1)

TT-groupRibosomal protein L31e/gp120 outer domain(259.1.1)

FFamilyGP120(259.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 5CAY RCSB PDB: 5CAY PDBe: 5CAY UniProt: P20872

Downloads

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